Index Seq ID Count Primer type Orientation Start Len tm GC% Any compl 3' compl Seq Prod size Seq len Included len Pair any compl Pair 3' compl Motif Motif Len SSR SSRLen 1 @GRC13_0019_FC:6:2:12331:13349#ATGT/1_@GRC13_0019_FC:6:2:12331:13349#ATGT/2 1 SSR FORWARD 43 19 54.28 47.37 4.00 2.00 CTAGATGATGCTTGGTTGC 134 202 202 4.00 2.00 CTT 3 CTTCTTCTTCTT 12 2 @GRC13_0019_FC:6:2:12331:13349#ATGT/1_@GRC13_0019_FC:6:2:12331:13349#ATGT/2 1 SSR REVERSE 176 19 53.31 36.84 4.00 2.00 TTGATAAAGCCGATAAAGC 3 @GRC13_0019_FC:6:3:14242:16895#ATGT/1_@GRC13_0019_FC:6:3:14242:16895#ATGT/2 1 SSR FORWARD 39 20 53.71 50.00 2.00 2.00 GCTGTCTGTTTACTCTGCTG 110 202 202 4.00 2.00 ATT 3 ATTATTATTATTATTATT 18 4 @GRC13_0019_FC:6:3:14242:16895#ATGT/1_@GRC13_0019_FC:6:3:14242:16895#ATGT/2 1 SSR REVERSE 148 19 53.14 36.84 5.00 2.00 GGCTTAGGCAAATAATTCA 5 @GRC13_0019_FC:6:3:12432:20407#ATGT/1_@GRC13_0019_FC:6:3:12432:20407#ATGT/2 1 SSR FORWARD 24 19 54.38 52.63 4.00 2.00 GCTCTGCTAGTTCTGCTCA 131 202 202 3.00 3.00 GAA 3 GAAGAAGAAGAA 12 6 @GRC13_0019_FC:6:3:12432:20407#ATGT/1_@GRC13_0019_FC:6:3:12432:20407#ATGT/2 1 SSR REVERSE 154 20 53.74 50.00 8.00 3.00 ACCAGTGGTACACACTCTGA 7 @GRC13_0019_FC:6:6:7174:6677#ATGT/1_@GRC13_0019_FC:6:6:7174:6677#ATGT/2 1 SSR FORWARD 34 19 54.39 36.84 4.00 1.00 TCGAATATGGAAAAGCTCA 127 202 202 6.00 2.00 CTT 3 CTTCTTCTTCTT 12 8 @GRC13_0019_FC:6:6:7174:6677#ATGT/1_@GRC13_0019_FC:6:6:7174:6677#ATGT/2 1 SSR REVERSE 160 19 53.91 47.37 5.00 3.00 GGGACCTAAGAAATTCGAG 9 @GRC13_0019_FC:6:7:18579:16378#ATGT/1_@GRC13_0019_FC:6:7:18579:16378#ATGT/2 1 SSR FORWARD 1 19 52.30 42.11 4.00 0.00 GGCTTAATGTTTCTTGACC 190 202 202 7.00 3.00 TTG 3 TTGTTGTTGTTG 12 10 @GRC13_0019_FC:6:7:18579:16378#ATGT/1_@GRC13_0019_FC:6:7:18579:16378#ATGT/2 1 SSR REVERSE 190 20 53.40 30.00 3.00 0.00 TTCAACAACAACAAACAACA 11 @GRC13_0019_FC:6:10:6139:13218#ATGT/1_@GRC13_0019_FC:6:10:6139:13218#ATGT/2 1 SSR FORWARD 40 19 53.45 36.84 2.00 0.00 AAAAGGCAAGTCAAGTCAA 134 202 202 3.00 2.00 GGA 3 GGAGGAGGAGGA 12 12 @GRC13_0019_FC:6:10:6139:13218#ATGT/1_@GRC13_0019_FC:6:10:6139:13218#ATGT/2 1 SSR REVERSE 173 20 53.44 45.00 4.00 0.00 CCAACCATGAGAGATAGACA 13 @GRC13_0019_FC:6:10:3409:19825#ATGT/1_@GRC13_0019_FC:6:10:3409:19825#TCAG/2 1 SSR FORWARD 25 19 54.43 47.37 3.00 3.00 GACCAAGAAACCCTGAATC 137 202 202 5.00 2.00 CAA 3 CAACAACAACAACAACAA 18 14 @GRC13_0019_FC:6:10:3409:19825#ATGT/1_@GRC13_0019_FC:6:10:3409:19825#TCAG/2 1 SSR REVERSE 161 19 53.65 36.84 0.00 0.00 TTGTTGTTGTTGTTGTTGG 15 @GRC13_0019_FC:6:10:3409:19825#ATGT/1_@GRC13_0019_FC:6:10:3409:19825#TCAG/2 1 SSR FORWARD 31 19 54.47 42.11 4.00 0.00 GAAACCCTGAATCCAAAAC 165 202 202 4.00 2.00 CAA 3 CAACAACAACAACAACAACAA 21 16 @GRC13_0019_FC:6:10:3409:19825#ATGT/1_@GRC13_0019_FC:6:10:3409:19825#TCAG/2 1 SSR REVERSE 195 19 54.12 42.11 4.00 0.00 TGCTGGTTGTTGTACCTTT 17 @GRC13_0019_FC:6:14:10576:7597#ATGT/1_@GRC13_0019_FC:6:14:10576:7597#ATGT/2 1 SSR FORWARD 15 19 53.96 42.11 5.00 1.00 TACTGAACCTTGCCAAAAG 151 202 202 3.00 1.00 GAT 3 GATGATGATGATGATGATGATGATGATGATGATGAT 36 18 @GRC13_0019_FC:6:14:10576:7597#ATGT/1_@GRC13_0019_FC:6:14:10576:7597#ATGT/2 1 SSR REVERSE 165 19 53.79 57.89 4.00 0.00 CAGAACTCTCCTCCTCCTC 19 @GRC13_0019_FC:6:14:10576:7597#ATGT/1_@GRC13_0019_FC:6:14:10576:7597#ATGT/2 1 SSR FORWARD 29 19 54.06 36.84 3.00 2.00 AAAAGCAACCAGATGATGA 135 202 202 4.00 3.00 ATG 3 ATGATGATGATG 12 20 @GRC13_0019_FC:6:14:10576:7597#ATGT/1_@GRC13_0019_FC:6:14:10576:7597#ATGT/2 1 SSR REVERSE 163 19 54.85 57.89 2.00 0.00 GAACTCTCCTCCTCCTCCT 21 @GRC13_0019_FC:6:14:10576:7597#ATGT/1_@GRC13_0019_FC:6:14:10576:7597#ATGT/2 1 SSR FORWARD 29 19 54.06 36.84 3.00 2.00 AAAAGCAACCAGATGATGA 162 202 202 7.00 2.00 GAG 3 GAGGAGGAGGAGGAGGAGGAG 21 22 @GRC13_0019_FC:6:14:10576:7597#ATGT/1_@GRC13_0019_FC:6:14:10576:7597#ATGT/2 1 SSR REVERSE 190 19 54.30 42.11 5.00 1.00 TGCTTTTAGCAAGGTTCAG 23 @GRC13_0019_FC:6:15:15514:3866#ATCT/1_@GRC13_0019_FC:6:15:15514:3866#ATGT/2 1 SSR FORWARD 38 19 53.52 42.11 3.00 0.00 GTAAATGATGGGTTGATGG 127 202 202 3.00 2.00 GGA 3 GGAGGAGGAGGAGGA 15 24 @GRC13_0019_FC:6:15:15514:3866#ATCT/1_@GRC13_0019_FC:6:15:15514:3866#ATGT/2 1 SSR REVERSE 164 19 53.75 52.63 5.00 0.00 CAGATTCTTCCTCCTCCTC 25 @GRC13_0019_FC:6:15:15514:3866#ATCT/1_@GRC13_0019_FC:6:15:15514:3866#ATGT/2 1 SSR FORWARD 38 19 53.52 42.11 3.00 0.00 GTAAATGATGGGTTGATGG 148 202 202 4.00 0.00 GGA 3 GGAGGAGGAGGA 12 26 @GRC13_0019_FC:6:15:15514:3866#ATCT/1_@GRC13_0019_FC:6:15:15514:3866#ATGT/2 1 SSR REVERSE 185 19 53.90 36.84 2.00 0.00 GGAACAACAAGCAAGAAAA 27 @GRC13_0019_FC:6:18:12036:12317#ATGT/1_@GRC13_0019_FC:6:18:12036:12317#ATGT/2 1 SSR FORWARD 17 21 54.09 33.33 4.00 1.00 TTTGTAAAAGTCCAGGTTGTT 134 202 202 4.00 1.00 AAC 3 AACAACAACAAC 12 28 @GRC13_0019_FC:6:18:12036:12317#ATGT/1_@GRC13_0019_FC:6:18:12036:12317#ATGT/2 1 SSR REVERSE 150 19 54.63 42.11 4.00 1.00 CGGCCTCAAATAAACTCTT 29 @GRC13_0019_FC:6:19:9430:5995#ATGT/1_@GRC13_0019_FC:6:19:9430:5995#ATGT/2 1 SSR FORWARD 38 19 53.66 42.11 2.00 2.00 GGAAGACAGGCAACAAATA 120 202 202 6.00 1.00 AAT 3 AATAATAATAAT 12 30 @GRC13_0019_FC:6:19:9430:5995#ATGT/1_@GRC13_0019_FC:6:19:9430:5995#ATGT/2 1 SSR REVERSE 157 19 53.32 36.84 3.00 2.00 TCTCCTTTGTTCTTTGGAA 31 @GRC13_0019_FC:6:21:17946:14546#ATGT/1_@GRC13_0019_FC:6:21:17946:14546#ATGT/2 1 SSR FORWARD 41 21 54.03 47.62 6.00 3.00 TGTACTCGAGGGAGTAACAGT 128 202 202 2.00 1.00 CTT 3 CTTCTTCTTCTT 12 32 @GRC13_0019_FC:6:21:17946:14546#ATGT/1_@GRC13_0019_FC:6:21:17946:14546#ATGT/2 1 SSR REVERSE 168 19 53.08 47.37 3.00 0.00 CAGGTGGCTAAGAAGAAGA 33 @GRC13_0019_FC:6:21:17946:14546#ATGT/1_@GRC13_0019_FC:6:21:17946:14546#ATGT/2 1 SSR FORWARD 41 21 54.03 47.62 6.00 3.00 TGTACTCGAGGGAGTAACAGT 147 202 202 7.00 2.00 TCT 3 TCTTCTTCTTCTTCTTCT 18 34 @GRC13_0019_FC:6:21:17946:14546#ATGT/1_@GRC13_0019_FC:6:21:17946:14546#ATGT/2 1 SSR REVERSE 187 17 54.21 52.94 6.00 2.00 AGGCCTCGTTTCGAGTA 35 @GRC13_0019_FC:6:21:14305:20907#ATGT/1_@GRC13_0019_FC:6:21:14305:20907#ATGT/2 1 SSR FORWARD 47 19 54.92 42.11 3.00 0.00 CAGGAAAAACTGGAAAAGG 133 202 202 3.00 1.00 TGC 3 TGCTGCTGCTGCTGCTGCTGC 21 36 @GRC13_0019_FC:6:21:14305:20907#ATGT/1_@GRC13_0019_FC:6:21:14305:20907#ATGT/2 1 SSR REVERSE 179 19 54.24 47.37 4.00 2.00 TCTGGTGGCTATCATCATC 37 @GRC13_0019_FC:6:21:14305:20907#ATGT/1_@GRC13_0019_FC:6:21:14305:20907#ATGT/2 1 SSR FORWARD 47 19 54.92 42.11 3.00 0.00 CAGGAAAAACTGGAAAAGG 141 202 202 5.00 0.00 TGA 3 TGATGATGATGATGATGATGA 21 38 @GRC13_0019_FC:6:21:14305:20907#ATGT/1_@GRC13_0019_FC:6:21:14305:20907#ATGT/2 1 SSR REVERSE 187 19 52.26 47.37 2.00 2.00 ACTTCCTATCTGGTGGCTA 39 @GRC13_0019_FC:6:36:11802:10891#ATGT/1_@GRC13_0019_FC:6:36:11802:10891#ACGT/2 1 SSR FORWARD 28 20 53.58 45.00 5.00 1.00 CCTGAAGAACTTGAAGGAGT 135 202 202 3.00 1.00 AAG 3 AAGAAGAAGAAGAAGAAG 18 40 @GRC13_0019_FC:6:36:11802:10891#ATGT/1_@GRC13_0019_FC:6:36:11802:10891#ACGT/2 1 SSR REVERSE 162 18 54.37 44.44 3.00 2.00 GCACTTTTGTCCCCAATA 41 @GRC13_0019_FC:6:36:14296:20904#ATGT/1_@GRC13_0019_FC:6:36:14296:20904#CCCT/2 1 SSR FORWARD 21 19 54.71 47.37 4.00 2.00 TTGAGCATCCATAGCTGAC 144 202 202 5.00 2.00 TTG 3 TTGTTGTTGTTGTTGTTG 18 42 @GRC13_0019_FC:6:36:14296:20904#ATGT/1_@GRC13_0019_FC:6:36:14296:20904#CCCT/2 1 SSR REVERSE 164 19 54.06 47.37 4.00 0.00 GGAGCTACAGAAACAGCAA 43 @GRC13_0019_FC:6:41:16360:11900#ATGT/1_@GRC13_0019_FC:6:41:16360:11900#ATGT/2 1 SSR FORWARD 45 19 52.78 42.11 4.00 3.00 TTCACTACGTTGCTTCAGA 144 202 202 2.00 0.00 AAC 3 AACAACAACAAC 12 44 @GRC13_0019_FC:6:41:16360:11900#ATGT/1_@GRC13_0019_FC:6:41:16360:11900#ATGT/2 1 SSR REVERSE 188 19 53.95 36.84 4.00 2.00 TTCCCTTTGTCATGGTTTA 45 @GRC13_0019_FC:6:54:14430:8679#ATGT/1_@GRC13_0019_FC:6:54:14430:8679#ATGT/2 1 SSR FORWARD 21 19 54.00 47.37 4.00 0.00 AACTTGTGCGTTCAGCTAC 143 202 202 4.00 3.00 CTT 3 CTTCTTCTTCTT 12 46 @GRC13_0019_FC:6:54:14430:8679#ATGT/1_@GRC13_0019_FC:6:54:14430:8679#ATGT/2 1 SSR REVERSE 163 19 54.26 42.11 2.00 0.00 AAGAAGAAGAAGGGAAGCA 47 @GRC13_0019_FC:6:54:14430:8679#ATGT/1_@GRC13_0019_FC:6:54:14430:8679#ATGT/2 1 SSR FORWARD 56 19 53.14 42.11 2.00 0.00 ATGCTTCCCTTCTTCTTCT 133 202 202 4.00 3.00 CTT 3 CTTCTTCTTCTT 12 48 @GRC13_0019_FC:6:54:14430:8679#ATGT/1_@GRC13_0019_FC:6:54:14430:8679#ATGT/2 1 SSR REVERSE 188 20 53.77 35.00 4.00 0.00 TCATGGAAATATGATGGAGA 49 @GRC13_0019_FC:6:57:2016:12747#ATGT/1_@GRC13_0019_FC:6:57:2016:12747#ATGT/2 1 SSR FORWARD 31 22 50.91 31.82 4.00 1.00 AACTATTTCCTATGTGTCAGAA 130 202 202 3.00 2.00 GAA 3 GAAGAAGAAGAA 12 50 @GRC13_0019_FC:6:57:2016:12747#ATGT/1_@GRC13_0019_FC:6:57:2016:12747#ATGT/2 1 SSR REVERSE 160 19 53.66 42.11 7.00 3.00 GGGATCCTTGATGGATTAT 51 @GRC13_0019_FC:6:58:5381:16003#ATGT/1_@GRC13_0019_FC:6:58:5381:16003#ATGT/2 1 SSR FORWARD 56 20 51.75 30.00 1.00 0.00 TGTTTTTCTTCCTTGTTTCT 117 202 202 5.00 2.00 CTT 3 CTTCTTCTTCTT 12 52 @GRC13_0019_FC:6:58:5381:16003#ATGT/1_@GRC13_0019_FC:6:58:5381:16003#ATGT/2 1 SSR REVERSE 172 20 53.93 35.00 4.00 3.00 CATGGCAAAACTCTATTGAA 53 @GRC13_0019_FC:6:69:14528:17992#ATGT/1_@GRC13_0019_FC:6:69:14528:17992#ATGT/2 1 SSR FORWARD 13 19 53.52 42.11 2.00 2.00 AGGGGAATAACAAGAAAGC 150 202 202 3.00 1.00 GAA 3 GAAGAAGAAGAA 12 54 @GRC13_0019_FC:6:69:14528:17992#ATGT/1_@GRC13_0019_FC:6:69:14528:17992#ATGT/2 1 SSR REVERSE 162 18 54.59 44.44 4.00 1.00 GCTGCAAATCCAACAACT 55 @GRC13_0019_FC:6:74:1407:1736#ATGT/1_@GRC13_0019_FC:6:74:1407:1736#ATGT/2 1 SSR FORWARD 22 18 54.55 44.44 4.00 0.00 TCTGCAATGAATGGTGTG 129 202 202 3.00 1.00 GAT 3 GATGATGATGATGATGATGATGATGATGATGATGAT 36 56 @GRC13_0019_FC:6:74:1407:1736#ATGT/1_@GRC13_0019_FC:6:74:1407:1736#ATGT/2 1 SSR REVERSE 150 19 53.89 47.37 4.00 2.00 AAGGTCTTGGGAATGTACC 57 @GRC13_0019_FC:6:80:5767:12532#ATGT/1_@GRC13_0019_FC:6:80:5767:12532#ATGT/2 1 SSR FORWARD 28 19 54.24 47.37 6.00 1.00 AGCTAGCAACCCAGAAACT 143 202 202 4.00 0.00 ACA 3 ACAACAACAACAACA 15 58 @GRC13_0019_FC:6:80:5767:12532#ATGT/1_@GRC13_0019_FC:6:80:5767:12532#ATGT/2 1 SSR REVERSE 170 19 52.86 36.84 3.00 3.00 GCTGGAATAAAGCAATCAT 59 @GRC13_0019_FC:6:88:6024:2361#ATGT/1_@GRC13_0019_FC:6:88:6024:2361#ATGT/2 1 SSR FORWARD 47 19 55.23 52.63 4.00 2.00 CCTTTCTCCTTGCTGAGAG 116 202 202 6.00 3.00 GTT 3 GTTGTTGTTGTTGTTGTT 18 60 @GRC13_0019_FC:6:88:6024:2361#ATGT/1_@GRC13_0019_FC:6:88:6024:2361#ATGT/2 1 SSR REVERSE 162 18 54.04 50.00 5.00 0.00 AGCAAGACCCTGTCTCAA 61 @GRC13_0019_FC:6:114:17978:2042#ATGT/1_@GRC13_0019_FC:6:114:17978:2042#ATGT/2 1 SSR FORWARD 16 19 54.00 42.11 3.00 0.00 TACACAAACCAGGAAAGGA 131 202 202 5.00 3.00 ACA 3 ACAACAACAACAACAACA 18 62 @GRC13_0019_FC:6:114:17978:2042#ATGT/1_@GRC13_0019_FC:6:114:17978:2042#ATGT/2 1 SSR REVERSE 146 19 54.87 42.11 4.00 2.00 TTAAACCATCCCTGAATCC 63 @GRC13_0019_FC:6:114:17978:2042#ATGT/1_@GRC13_0019_FC:6:114:17978:2042#ATGT/2 1 SSR FORWARD 26 19 53.84 42.11 1.00 0.00 AGGAAAGGACACAACAACA 121 202 202 4.00 0.00 AAC 3 AACAACAACAACAAC 15 64 @GRC13_0019_FC:6:114:17978:2042#ATGT/1_@GRC13_0019_FC:6:114:17978:2042#ATGT/2 1 SSR REVERSE 146 19 54.87 42.11 4.00 2.00 TTAAACCATCCCTGAATCC 65 @GRC13_0019_FC:6:116:17811:14065#ATGT/1_@GRC13_0019_FC:6:116:17811:14065#ATGT/2 1 SSR FORWARD 42 20 53.62 40.00 6.00 2.00 GTACAGAATGCGACATGTTT 107 202 202 2.00 1.00 TTG 3 TTGTTGTTGTTGTTG 15 66 @GRC13_0019_FC:6:116:17811:14065#ATGT/1_@GRC13_0019_FC:6:116:17811:14065#ATGT/2 1 SSR REVERSE 148 19 53.09 52.63 4.00 2.00 GGGGAGGAGGAGATATAGA 67 @GRC13_0019_FC:6:120:11908:16818#ATGT/1_@GRC13_0019_FC:6:120:11908:16818#ATGT/2 1 SSR FORWARD 45 21 53.84 33.33 1.00 0.00 GAGAAAAAGGACAAAAACAGA 120 202 202 4.00 0.00 TTA 3 TTATTATTATTA 12 68 @GRC13_0019_FC:6:120:11908:16818#ATGT/1_@GRC13_0019_FC:6:120:11908:16818#ATGT/2 1 SSR REVERSE 164 19 53.76 42.11 5.00 0.00 CGAGACTCCATCTCAAAAA