Wed Mar 05, 2014 14:30 EST
New DNA from 1 to 859
Alignment to
New DNA(1) from 1 to 922

Matches(|):329 
Mismatches(#):46 
Gaps( ):1031 
Unattempted(.):0 

                *         *         *         *         *         *         *         *         *         *
     1 AGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTAGAACGCTGAAGGAGGAGTTTGCTTCTCCGGATGAGTTGCGAACG 100   
                                                                                                                  
     1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1     

                *         *         *         *         *         *         *         *         *         *
   101 GGTGAGTAACGCGTAGGTAACCTGCCTGGTAGCGGGGGATAACTATTGGAAACGATAGCTAATACCGCATAAGAGTAGATGTTGCATGACATTTGCTTAA 200   
                                                                                                                  
     1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1     

                *         *         *         *         *         *         *         *         *         *
   201 AAGGTGCAATTGCATCACTACCAGATGGACCTGCGTTGTATTAGCTAGTTGGTGGGGTAACGGCTCACCAAGGCGACGATACATAGCCGACCTGAGAGGG 300   
                                                                                                                  
     1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1     

                *         *         *         *         *         *         *         *         *         *
   301 TGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGGAAGTCTGACCGAGCAACGCCGC 400   
                                                                                                                  
     1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1     

                *         *         *         *         *         *         *         *         *         *
   401 GTGAGTGAAGAAGGTTTTCGGATCGTAAAGCTCTGTTGTAAGAGAAGAACGAGTGTGAGAGTGGAAAGTTCACACTGTGACGGTATCTTACCAGAAAGGG 500   
                                                                                         #|#|#|||||||||||||       
     1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NTNTNTTACCAGAAAGGG 18    
                                                                                                  *        

                *         *         *         *         *          *         *         *         *         
   501 ACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTGTCC-GGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTAGATAAGTCTG 599   
       |||||||||||||##|||||||||||||||||||||||||||||||| #||||| |||||||||||||||||||||||||||||||||||||||||||||       
    19 ACGGCTAACTACGNNCCAGCAGCCGCGGTAATACGTAGGTCCCGAGC-NTGTCCGGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTAGATAAGTCTG 117   
        *         *         *         *         *          *         *         *         *         *       

       *         *         *         *         *         *         *         *         *         *         
   600 AAGTTAAAGGCTGTGGCTTAACCATAGTACGCTTTGGAAACTGTTTAACTTGAGTGCAAGAGGGGAGAGTGGAATTCCATGTGTAGCGGTGAAATGCGTA 699   
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
   118 AAGTTAAAGGCTGTGGCTTAACCATAGTACGCTTTGGAAACTGTTTAACTTGAGTGCAAGAGGGGAGAGTGGAATTCCATGTGTAGCGGTGAAATGCGTA 217   
         *         *         *         *         *         *         *         *         *         *       

       *         *         *          *         *         *         *          *         *         *       
   700 GATATATGGAGGNANCACCGGTGGCG-AAGCGGCTCTCTGGCTTGTAACTGACGCTGAGGCTCGANAGCGT-NNNAGCAAACAGGNTTNNATACCNTGNT 797   
       |||||||||||| |#||||||||||| ||||||||||||||||||||||||||||||||||||||#||||| ###||||||||||#||##|||||#||#|       
   218 GATATATGGAGG-AACACCGGTGGCGAAAGCGGCTCTCTGGCTTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316   
         *          *         *         *         *         *         *         *         *         *      

         *          *         *         *         *                                                        
   798 AGT-CNCGCCGTANNNNNNGANTGNNTAGNNNNAAACCCNTTNCNNGGNT-------------------------------------------------- 846   
       ||| |#|||||||######||#||####|####|#||||#||#|##||#|                                                         
   317 AGTCCACGCCGTAAACGATGAGTGCTAGGTGTTAGACCCTTTCCGGGGTTTAGTGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGACCGCA 416   
          *         *         *         *         *         *         *         *         *         *      

                           *
   847 -----------------ANTNGNCNNNNG----------------------------------------------------------------------- 858   
                        |#|#|#|####|                                                                              
   417 AGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCC 516   
          *         *         *         *         *         *         *         *         *         *      

   859 ---------------------------------------------------------------------------------------------------- 859   
                                                                                                                  
   517 TCTGACCGCTCTAGAGATAGAGTTTTCCTTCGGGACAGAGGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC 616   
          *         *         *         *         *         *         *         *         *         *      

   859 ---------------------------------------------------------------------------------------------------- 859   
                                                                                                                  
   617 AACGAGCGCAACCCCTATTGTTAGTTGCCATCATTCAGTTGGGCACTCTAGCGAGACTGCCGGTAATAAACCGGAGGAAGGTGGGGATGACGTCAAATCA 716   
          *         *         *         *         *         *         *         *         *         *      

   859 ---------------------------------------------------------------------------------------------------- 859   
                                                                                                                  
   717 TCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGCTGGTACAACGAGTCGCAAGCCGGTGACGGCAAGCTAATCTCTTAAAGCCAGTCTCAGT 816   
          *         *         *         *         *         *         *         *         *         *      

   859 ---------------------------------------------------------------------------------------------------- 859   
                                                                                                                  
   817 TCGGATTGTAGGCTGCAACTCGCCTACATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCACGTCGCGGTGAATACGTTCCCGGGCCTTGTACACACCG 916   
          *         *         *         *         *         *         *         *         *         *      

       
   859 -----N 859   
            #       
   917 CCCGTC 922   
          *