LOCUS JCA_fimH_region 1445 bp ds-DNA linear 31-JAN-2009 DEFINITION Escherichia coli str. K-12 substr. MG1655, complete genome. ACCESSION NC_000913 REGION: 4545000..4548000 VERSION NC_000913.2 GI:49175990 PROJECT GenomeProject:225 KEYWORDS . SOURCE Escherichia coli str. K-12 substr. MG1655 ORGANISM Escherichia coli str. K-12 substr. MG1655 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 3001) AUTHORS Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R., Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. TITLE Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 JOURNAL Nucleic Acids Res. 34 (1), 1-9 (2006) PUBMED 16397293 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3001) AUTHORS Blattner,F.R., Plunkett,G., Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C.K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) PUBMED 9278503 REFERENCE 3 (sites) AUTHORS Kang,W.K., Icho,T., Isono,S., Kitakawa,M. and Isono,K. TITLE Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12 JOURNAL Mol. Gen. Genet. 217 (2-3), 281-288 (1989) PUBMED 2570347 REFERENCE 4 (bases 1 to 3001) AUTHORS Arnaud,M., Berlyn,M.K.B., Blattner,F.R., Galperin,M.Y., Glasner,J.D., Horiuchi,T., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Riley,M., Rudd,K.E., Serres,M.H., Thomas,G.H. and Wanner,B.L. TITLE Workshop on Annotation of Escherichia coli K-12 JOURNAL Unpublished REMARK Woods Hole, Mass., on 14-18 November 2003 (sequence corrections) REFERENCE 5 (bases 1 to 3001) AUTHORS Glasner,J.D., Perna,N.T., Plunkett,G. III, Anderson,B.D., Bockhorst,J., Hu,J.C., Riley,M., Rudd,K.E. and Serres,M.H. TITLE ASAP: Escherichia coli K-12 strain MG1655 version m56 JOURNAL Unpublished REMARK ASAP download 10 June 2004 (annotation updates) REFERENCE 6 (bases 1 to 3001) AUTHORS Hayashi,K., Morooka,N., Mori,H. and Horiuchi,T. TITLE A more accurate sequence comparison between genomes of Escherichia coli K12 W3110 and MG1655 strains JOURNAL Unpublished REMARK GenBank accessions AG613214 to AG613378 (sequence corrections) REFERENCE 7 (bases 1 to 3001) AUTHORS Perna,N.T. TITLE Escherichia coli K-12 MG1655 yqiK-rfaE intergenic region, genomic sequence correction JOURNAL Unpublished REMARK GenBank accession AY605712 (sequence corrections) REFERENCE 8 (bases 1 to 3001) AUTHORS Rudd,K.E. TITLE A manual approach to accurate translation start site annotation: an E. coli K-12 case study JOURNAL Unpublished REFERENCE 9 (bases 1 to 3001) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-JAN-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 10 (bases 1 to 3001) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (22-DEC-2008) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Annotation update from ecogene.org as a multi-database collaboration REFERENCE 11 (bases 1 to 3001) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (12-MAR-2008) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Annotation update from ecogene.org as a multi-database collaboration REFERENCE 12 (bases 1 to 3001) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (26-SEP-2007) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Annotation update from ecogene.org as a multi-database collaboration REFERENCE 13 (bases 1 to 3001) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (24-APR-2007) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Annotation update from ecogene.org as a multi-database collaboration REFERENCE 14 (bases 1 to 3001) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (07-FEB-2006) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein updates by submitter REFERENCE 15 (bases 1 to 3001) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (10-JUN-2004) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Sequence update by submitter REFERENCE 16 (bases 1 to 3001) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (13-OCT-1998) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REFERENCE 17 (bases 1 to 3001) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (02-SEP-1997) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REFERENCE 18 (bases 1 to 3001) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (16-JAN-1997) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U00096. On Jun 24, 2004 this sequence version replaced gi:16127994. Current U00096 annotation updates are derived from EcoGene http://ecogene.org. Suggestions for updates can be sent to Dr. Kenneth Rudd (krudd@miami.edu). These updates are being generated from a collaboration that also includes ASAP/ERIC, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot. COMPLETENESS: full length. COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers gene 339..1178 /gene="fimH" /locus_tag="b4320" /gene_synonym="ECK4311" /gene_synonym="JW4283" /db_xref="ECOCYC:EG10315" /db_xref="EcoGene:EG10315" /db_xref="GeneID:948847" /label=fimH /ApEinfo_fwdcolor=#f2d08a /ApEinfo_revcolor=#f2d08a misc_feature 276..338 /label=Prepro /ApEinfo_fwdcolor=#91936c /ApEinfo_revcolor=#91936c ORIGIN 1 ggtcactgcc agcttcagcg gggcagccga cagtaccgga tattataaaa accaggggac 61 cgcgcaaaac atccagttag agctacagga tgacagtggc aacacattga atactggcgc 121 aaccaaaaca gttcaggtgg atgattcctc acaatcagcg cacttcccgt tacaggtcag 181 agcattgaca gtaaatggcg gagccactca gggaaccatt caggcagtga ttagcatcac 241 ctatacctac agctgaaccc gaagagatga ttgtaatgaa acgagttatt accctgtttg 301 ctgtactgct gatgggctgg tcggtaaatg cctggtcatt cgcctgtaaa accgccaatg 361 gtaccgctat ccctattggc ggtggcagcg ccaatgttta tgtaaacctt gcgcccgtcg 421 tgaatgtggg gcaaaacctg gtcgtggatc tttcgacgca aatcttttgc cataacgatt 481 atccggaaac cattacagac tatgtcacac tgcaacgagg ctcggcttat ggcggcgtgt 541 tatctaattt ttccgggacc gtaaaatata gtggcagtag ctatccattt cctaccacca 601 gcgaaacgcc gcgcgttgtt tataattcga gaacggataa gccgtggccg gtggcgcttt 661 atttgacgcc tgtgagcagt gcgggcgggg tggcgattaa agctggctca ttaattgccg 721 tgcttatttt gcgacagacc aacaactata acagcgatga tttccagttt gtgtggaata 781 tttacgccaa taatgatgtg gtggtgccta ctggcggctg cgatgtttct gctcgtgatg 841 tcaccgttac tctgccggac taccctggtt cagtgccaat tcctcttacc gtttattgtg 901 cgaaaagcca aaacctgggg tattacctct ccggcacaac cgcagatgcg ggcaactcga 961 ttttcaccaa taccgcgtcg ttttcacctg cacagggcgt cggcgtacag ttgacgcgca 1021 acggtacgat tattccagcg aataacacgg tatcgttagg agcagtaggg acttcggcgg 1081 tgagtctggg attaacggca aattatgcac gtaccggagg gcaggtgact gcagggaatg 1141 tgcaatcgat tattggcgtg acttttgttt atcaataaag aaatcacagg acattgctaa 1201 tgctggtacg caatattacc tgaagctaaa aacctgcacg ttagcccttt gtaggccaga 1261 taagacgcgt cagcgtcgca tctggcataa acaaagcgca ctttgctggt ctgttcccct 1321 caccctaacc ctctccccgg aggggcgagg ggactgtccg ggcacatttt tagactttgt 1381 catcagtctg agcctgccat tggcaggctc tggtgtcctt ttacgctacc atgctaataa 1441 tcagc //