NCBI Blast:Q9BDJ6|GHRL_BOVIN Bos taurus

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Job Title: Q9BDJ6|GHRL_BOVIN Bos taurus

TBLASTN 2.2.18 (Feb-03-2008)

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: UR43VBN1015 Database: GenBank non-mouse and non-human EST entries 36,645,425 sequences; 20,786,565,479 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Q9BDJ6|GHRL_BOVIN Bos taurus
Length=116

Distribution of 19 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|EE777658.1|  020502OMGB11029077HT OMGB1 Ovis aries cDNA, mRNA    188    3e-46 
gb|EE849986.1|  020829OSI1025052HT OSI Ovis aries cDNA, mRNA sequ   158    3e-37 
gb|EE849434.1|  020829OSI1025020HT OSI Ovis aries cDNA, mRNA sequ   138    4e-31 
gb|AI549172.1|  UI-R-C3-ts-d-11-0-UI.s1 UI-R-C3 Rattus norvegi...   105    3e-21 
gb|BF543543.1|  UI-R-C3-ts-d-11-0-UI.r1 UI-R-C3 Rattus norvegi...  90.9    8e-17 
emb|CR467735.1|  CR467735 Rat pBluescript Lion Rattus norvegic...  84.7    7e-15 
gb|BU144131.1|  603228965F1 CSEQCHL26 Gallus gallus cDNA clone...  80.5    1e-13 
gb|BU451599.1|  603216176F1 CSEQRBN14 Gallus gallus cDNA clone...  79.3    2e-13 
gb|BU201091.1|  604156904F1 CSEQCHN03 Gallus gallus cDNA clone...  51.2    2e-09 
gb|EW025078.1|  rcst37_n24.y1 cst Sus scrofa cDNA 5', mRNA sequen  58.9    4e-07 
gb|EW026717.1|  rcst15_e18.y1 cst Sus scrofa cDNA 5', mRNA sequen  53.9    1e-05 
gb|EW025952.1|  rcst08_k13.y1 cst Sus scrofa cDNA 5', mRNA sequen  53.9    1e-05 
gb|DR430131.1|  nax26d03.y1 Chicken eye (embryo). Unnormalized...  42.4    0.038
gb|CD729033.1|  4035617 1GAL - Chicken Intestinal Lymphocyte G...  42.4    0.038
gb|DT715338.1|  s13dFA43B07SD061_512884 Tall fescue, Festuca a...  35.4    4.3  
gb|DT681900.1|  s13dFA25H07DS064_81767 Tall fescue, Festuca ar...  35.0    4.9

Alignments

 

>gb|EE777658.1|  020502OMGB11029077HT OMGB1 Ovis aries cDNA, mRNA sequence.
Length=464

 Score =  188 bits (478),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 95/104 (91%), Positives = 99/104 (95%), Gaps = 0/104 (0%)
 Frame = +2

Query  13   LSVLCMDLAMAGSSFLSPEHQKLQRKEAKKPSGRLKPRTLEGQFDPEVGSQAEGAEDELE  72
            LS+L MDLAMAGSSFLSPEHQKLQRKE KKPSGRLKPR LEGQFDP+VGSQ EGAEDELE
Sbjct  20   LSLLWMDLAMAGSSFLSPEHQKLQRKEPKKPSGRLKPRALEGQFDPDVGSQEEGAEDELE  199

Query  73   IRFNAPFNIGIKLAGAQSLQHGQTLGKFLQDILWEEAEETLANE  116
            IRFNAPFNIGIKL+GAQSLQHGQTLGK LQDILWEEAEETLA+E
Sbjct  200  IRFNAPFNIGIKLSGAQSLQHGQTLGKPLQDILWEEAEETLADE  331


>gb|EE849986.1|  020829OSI1025052HT OSI Ovis aries cDNA, mRNA sequence.
Length=385

 Score =  158 bits (400),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 78/84 (92%), Positives = 81/84 (96%), Gaps = 0/84 (0%)
 Frame = +1

Query  33   QKLQRKEAKKPSGRLKPRTLEGQFDPEVGSQAEGAEDELEIRFNAPFNIGIKLAGAQSLQ  92
            QKLQRKE KKPSGRLKPR LEGQFDP+VGSQ EGAEDELEIRFNAPFNIGIKL+GAQSLQ
Sbjct  1    QKLQRKEPKKPSGRLKPRALEGQFDPDVGSQEEGAEDELEIRFNAPFNIGIKLSGAQSLQ  180

Query  93   HGQTLGKFLQDILWEEAEETLANE  116
            HGQTLGKFLQDILWEEAEETLA+E
Sbjct  181  HGQTLGKFLQDILWEEAEETLADE  252


>gb|EE849434.1|  020829OSI1025020HT OSI Ovis aries cDNA, mRNA sequence.
Length=352

 Score =  138 bits (348),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%), Gaps = 0/72 (0%)
 Frame = +3

Query  45   GRLKPRTLEGQFDPEVGSQAEGAEDELEIRFNAPFNIGIKLAGAQSLQHGQTLGKFLQDI  104
            GRLKPR LEGQFDP+VGSQ EGAEDELEIRFNAPFNIGIKL+GAQSLQHGQTLGKFLQDI
Sbjct  3    GRLKPRALEGQFDPDVGSQEEGAEDELEIRFNAPFNIGIKLSGAQSLQHGQTLGKFLQDI  182

Query  105  LWEEAEETLANE  116
            LWEEAEETLA+E
Sbjct  183  LWEEAEETLADE  218


>gb|AI549172.1|  UI-R-C3-ts-d-11-0-UI.s1 UI-R-C3 Rattus norvegicus cDNA clone 
UI-R-C3-ts-d-11-0-UI 3', mRNA sequence.
Length=427

 Score =  105 bits (263),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
 Frame = -2

Query  22   MAGSSFLSPEHQKLQ-RKEAKKPSGRLKPRTLEGQFDPEVGSQAEGAEDELEIRFNAPFN  80
            MAGSSFLSPEHQK Q RKE+KKP  +L+PR LEG   PE   QAE AE+ELEIRFNAPF+
Sbjct  426  MAGSSFLSPEHQKAQQRKESKKPPAKLQPRALEGWLHPEDRGQAEEAEEELEIRFNAPFD  247

Query  81   IGIKLAGAQSLQHGQTLGKFLQDIL  105
            +GIKL+GAQ  QHG+ LGKFLQDIL
Sbjct  246  VGIKLSGAQYQQHGRALGKFLQDIL  172


>gb|BF543543.1|  UI-R-C3-ts-d-11-0-UI.r1 UI-R-C3 Rattus norvegicus cDNA clone 
UI-R-C3-ts-d-11-0-UI 5', mRNA sequence.
Length=294

 Score = 90.9 bits (224),  Expect = 8e-17, Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
 Frame = +2

Query  6    TICSLLLLSVLCMDLAMAGSSFLSPEHQKLQ-RKEAKKPSGRLKPRTLEGQFDPEVGSQA  64
            TICSLLLLS+L MD+AMAGSSFLSPEHQK Q RKE+KKP  +L+PR LEG   PE   QA
Sbjct  41   TICSLLLLSMLWMDMAMAGSSFLSPEHQKAQQRKESKKPPAKLQPRALEGWLHPEDRGQA  220

Query  65   EGAEDELEIRFNAPFNIGIKLAGA  88
            E AE+ELEIRFNAPF++GIKL+GA
Sbjct  221  EEAEEELEIRFNAPFDVGIKLSGA  292


>emb|CR467735.1|  CR467735 Rat pBluescript Lion Rattus norvegicus cDNA clone LIONp463E01405 
3', mRNA sequence.
Length=345

 Score = 84.7 bits (208),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 57/71 (80%), Gaps = 0/71 (0%)
 Frame = -2

Query  46   RLKPRTLEGQFDPEVGSQAEGAEDELEIRFNAPFNIGIKLAGAQSLQHGQTLGKFLQDIL  105
            +L+PR LEG   PE   QAE AE+ELEIRFNAPF++GIKL+GAQ  QHG+ LGKFLQDIL
Sbjct  338  KLQPRALEGWLHPEDRGQAEEAEEELEIRFNAPFDVGIKLSGAQYQQHGRALGKFLQDIL  159

Query  106  WEEAEETLANE  116
            WEE +E  AN+
Sbjct  158  WEEVKEAPANK  126


>gb|BU144131.1|  603228965F1 CSEQCHL26 Gallus gallus cDNA clone ChEST221a18 5', 
mRNA sequence.
Length=739

 Score = 80.5 bits (197),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 6/97 (6%)
 Frame = +3

Query  19   DLAMAGSSFLSPEHQKLQR-KEAKKPSGRLKPRTLEGQFDPEVGSQAEGAEDE--LEIRF  75
            + A+AGSSFLSP ++ +Q+ K+ +KP+ RL  R  E  +D +   + EG +D   ++I+F
Sbjct  99   ETALAGSSFLSPTYKNIQQQKDTRKPTARLHRRGTESFWDTD---ETEGEDDNNSVDIKF  269

Query  76   NAPFNIGIKLAGAQSLQHGQTLGKFLQDILWEEAEET  112
            N PF IG+K+   +  ++GQ L K LQDIL E AEET
Sbjct  270  NVPFEIGVKITEREYQEYGQALEKMLQDILAENAEET  380


>gb|BU451599.1|  603216176F1 CSEQRBN14 Gallus gallus cDNA clone ChEST203g19 5', 
mRNA sequence.
Length=807

 Score = 79.3 bits (194),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 6/98 (6%)
 Frame = +3

Query  18   MDLAMAGSSFLSPEHQKLQR-KEAKKPSGRLKPRTLEGQFDPEVGSQAEGAEDE--LEIR  74
             + A+AGSSFLSP ++ +Q+ K+ +KP+ RL  R  E  +D +   + EG +D   ++I+
Sbjct  186  TETALAGSSFLSPTYKNIQQQKDTRKPTARLHRRGTESFWDTD---ETEGEDDNNSVDIK  356

Query  75   FNAPFNIGIKLAGAQSLQHGQTLGKFLQDILWEEAEET  112
            FN PF IG+K+   +  ++GQ L K LQDIL E AEET
Sbjct  357  FNVPFEIGVKITEREYQEYGQALEKMLQDILAENAEET  470


>gb|BU201091.1|  604156904F1 CSEQCHN03 Gallus gallus cDNA clone ChEST1006h2 5', 
mRNA sequence.
Length=617

 Score = 51.2 bits (121),  Expect(2) = 2e-09, Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
 Frame = +3

Query  62   SQAEGAEDE--LEIRFNAPFNIGIKLAGAQSLQHGQTLGKFLQDILWEEAEET  112
             + EG +D   ++I+FN PF IG+K+   +  ++GQ L K LQDIL E AEET
Sbjct  126  DETEGEDDNNSVDIKFNVPFEIGVKITEREYQEYGQALEKMLQDILAENAEET  284


 Score = 35.4 bits (80),  Expect(2) = 2e-09, Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +1

Query  19   DLAMAGSSFLSPEHQKL-QRKEAKKPSGRLKPRTLE  53
            + A+AGSSFLSP ++ + Q+K+ +KP+ RL  R  E
Sbjct  4    ETALAGSSFLSPTYKNIQQQKDTRKPTARLHRRGTE  111


>gb|EW025078.1|  rcst37_n24.y1 cst Sus scrofa cDNA 5', mRNA sequence.
Length=656

 Score = 58.9 bits (141),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
 Frame = +3

Query  20   LAMAGSSFLSPEHQKLQRKEAKKPSGRLKPRTLE-GQFDPEVGSQAEGAEDELEIRFNAP  78
            L  AGSSFLSPEHQK+QRKE+KK      P   + G     V S   G +    ++   P
Sbjct  111  LGHAGSSFLSPEHQKVQRKESKKQQPN*SPGPWKAGSAQKTVVSGRHGGQAGNPVQR--P  284

Query  79   FNIGIKLAGAQSLQHGQTLGKFLQDI  104
                 +L+GAQS QHGQ LGKFLQD 
Sbjct  285  L*CWDQLSGAQSDQHGQPLGKFLQDT  362


 Score = 42.0 bits (97),  Expect = 0.047, Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
 Frame = +1

Query  6    TICSLLLLSVLCM-DLAMAGSSFLSPEHQKLQRKEAKKPS-------GRLKPRTLEGQFD  57
            TICSLLLLSVL M DLAM   +  +P  +K + +  +  S       GRL          
Sbjct  67   TICSLLLLSVLLMADLAMRAPAS*APNTRKCRERSPRSSSQTEAPGPGRLA--------R  222

Query  58   PEVGSQAEGAEDELEIRFNAPFNIGIKLAGAQSLQHGQTLGKFLQDIL  105
            P      EG ED+LEIRFNAP ++GI   G          G F +  L
Sbjct  223  PRRQW*VEGTEDKLEIRFNAPCDVGISCQGLSPTSTASPWGNFSRTPL  366


>gb|EW026717.1|  rcst15_e18.y1 cst Sus scrofa cDNA 5', mRNA sequence.
Length=528

 Score = 53.9 bits (128),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
 Frame = +2

Query  20   LAMAGSSFLSPEHQKLQ-RKEAKKPSGRLKPRTLE-GQFDPEVGSQAEGAEDELEIRFNA  77
            L   G SFLSPEHQK+Q RKE+KKP+    P   + G     V     G +    ++   
Sbjct  104  LGHGGLSFLSPEHQKVQQRKESKKPAPN*SPGPWKAGSAQKTVVR*RHGGQAGNPVQ--R  277

Query  78   PFNIGIKLAGAQSLQHGQTLGKFLQDILWEEA  109
            P     +++GAQS QHGQ LGKFLQDIL + +
Sbjct  278  PL*CWDQVSGAQSDQHGQPLGKFLQDILGKRS  373


 Score = 50.1 bits (118),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
 Frame = +3

Query  19   DLAMAGSSFLSPEHQKLQRKEAKKPSGRLKPRTLEGQFDPEVGSQA--------EGAEDE  70
            DLAMAGS+  +P  +K  R+ +        PR+      P  G  A        EG ED+
Sbjct  102  DLAMAGSAS*APNTRKCSRERS--------PRSQRQTEAPGPGRLARPRRQW*GEGTEDK  257

Query  71   LEIRFNAPFNIGIKLAGAQSLQHGQTLGKFLQDIL  105
            LEIRFNAP ++GIK  G          G F +  L
Sbjct  258  LEIRFNAPCDVGIKCQGLSPTSTASPWGNFSRTSL  362


>gb|EW025952.1|  rcst08_k13.y1 cst Sus scrofa cDNA 5', mRNA sequence.
Length=592

 Score = 53.9 bits (128),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
 Frame = +1

Query  20   LAMAGSSFLSPEHQKLQ-RKEAKK--PSGRLKPRTLEGQFDPEVGSQAEGAEDELEIRFN  76
            L   GSSFLSPEHQK+Q RKE+KK  P+    P          VG +  G       R  
Sbjct  49   LGHGGSSFLSPEHQKVQQRKESKKQQPN*SPGPWKAGSAQKTVVGGRHGGQAGNPVQR--  222

Query  77   APFNIGIKLAGAQSLQHGQTLGKFLQD  103
             P     KL+GAQS QHGQ LGKFLQD
Sbjct  223  -PL*CWDKLSGAQSDQHGQPLGKFLQD  300


>gb|DR430131.1|  nax26d03.y1 Chicken eye (embryo). Unnormalized (nax) Gallus gallus 
cDNA clone nax26d03 5', mRNA sequence.
Length=792

 Score = 42.4 bits (98),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 0/36 (0%)
 Frame = +1

Query  75   FNAPFNIGIKLAGAQSLQHGQTLGKFLQDILWEEAE  110
            FN PF IG+K+   +  ++GQ L K LQDIL E AE
Sbjct  88   FNVPFEIGVKITEREYQEYGQALEKMLQDILAENAE  195


>gb|CD729033.1|  4035617 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA 
clone 1GAL_83F04 5', mRNA sequence.
Length=497

 Score = 42.4 bits (98),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 0/36 (0%)
 Frame = +2

Query  75   FNAPFNIGIKLAGAQSLQHGQTLGKFLQDILWEEAE  110
            FN PF IG+K+   +  ++GQ L K LQDIL E AE
Sbjct  23   FNVPFEIGVKITEREYQEYGQALEKMLQDILAENAE  130


>gb|DT715338.1|  s13dFA43B07SD061_512884 Tall fescue, Festuca arundinacea Schreb, 
young seedlings Festuca arundinacea cDNA, mRNA sequence.
Length=596

 Score = 35.4 bits (80),  Expect = 4.3, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
 Frame = +2

Query  13   LSVLCMDLAMAGSSFLSPEHQKLQRKEAKKPSGRLKP-RTLEGQFDPEVGSQAE------  65
            L V+   L + G S  S E    ++ +  +  G  +  + LEGQ  P+ GSQ E      
Sbjct  101  LLVIDSSLLLGGQSSKSKESVPYKKGDRVRYIGSSQSTKILEGQRAPDYGSQGEVRLSFE  280

Query  66   -GAEDELEIRFNAPFNIGIKLAGAQSLQHG  94
              A  ++ +RF+ P   GI L G+  + HG
Sbjct  281  ENASSKVGVRFDQPIPGGIDLGGSCEVDHG  370


>gb|DT681900.1|  s13dFA25H07DS064_81767 Tall fescue, Festuca arundinacea Schreb, 
Drought Stress Festuca arundinacea cDNA, mRNA sequence.
Length=546

 Score = 35.0 bits (79),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
 Frame = +2

Query  13   LSVLCMDLAMAGSSFLSPEHQKLQRKEAKKPSGRLKP-RTLEGQFDPEVGSQAE------  65
            L V+   L + G S  S E    ++ +  +  G  +  + LEGQ  P+ GSQ E      
Sbjct  83   LLVIDSSLLLGGQSSKSKESVPYKKGDRVRYIGSSQSTKILEGQRAPDYGSQGEVRLSFE  262

Query  66   -GAEDELEIRFNAPFNIGIKLAGAQSLQHG  94
              A  ++ +RF+ P   GI L G+  + HG
Sbjct  263  ENASSKVGVRFDQPIPGGIDLGGSCEVDHG  352

  Database: GenBank non-mouse and non-human EST entries
    Posted date:  Feb 5, 2008  6:03 PM
  Number of letters in database: -688,270,997
  Number of sequences in database:  36,645,425

Lambda     K      H
   0.315    0.133    0.388 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 36645425
Number of Hits to DB: 259758261
Number of extensions: 3095690
Number of successful extensions: 19448
Number of sequences better than 100: 8
Number of HSP's better than 100 without gapping: 0
Number of HSP's gapped: 19446
Number of HSP's successfully gapped: 8
Length of query: 116
Length of database: 20786565479
Length adjustment: 75
Effective length of query: 41
Effective length of database: 4180448284
Effective search space: 171398379644
Effective search space used: 171398379644
T: 13
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 68 (30.8 bits)

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