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Job Title: DNA_seq1

BLASTN 2.2.18 (Feb-03-2008) 
RID: UR2Z5D5Y013


Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
           6,366,000 sequences; 22,753,904,228 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  DNA_seq1
Length=210



Distance tree of resultsNew  


Legend for links to other resources:  UniGene   GEO   Gene   Structure   Map Viewer


Sequences producing significant alignments:
(Click headers to sort columns)





Accession
Description
Max score
Total score
Query coverage
E value
Max ident
Links







AC005606.3
  Homo sapiens chromosome 16, P1 clone 109-8C (LANL), complete sequence
 388 388100%3e-105100% Geo


NM_004209.4
  Homo sapiens synaptogyrin 3 (SYNGR3), mRNA
 388 388100%3e-105100% UniGene infoGeoGene info


CR608497.1
  full-length cDNA clone CS0DI044YA22 of Placenta Cot 25-normalized of Homo sapiens (human)
 381 38198%6e-103100% UniGene infoGene info


AK313894.1
  Homo sapiens cDNA, FLJ94530
 368 36894%4e-99100%


BC009568.1
  Homo sapiens synaptogyrin 3, mRNA (cDNA clone MGC:12440 IMAGE:3932502), complete cds
 329 32984%2e-87100% UniGene infoGeoGene info


CR616926.1
  full-length cDNA clone CS0DF034YH04 of Fetal brain of Homo sapiens (human)
 318 31881%5e-84100% UniGene infoGene info


CR597024.1
  full-length cDNA clone CS0DL009YF11 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human)
 316 31681%2e-83100% UniGene infoGene info


CR599198.1
  full-length cDNA clone CS0DF036YM16 of Fetal brain of Homo sapiens (human)
 296 29676%2e-77100% UniGene infoGene info


BC014087.2
  Homo sapiens synaptogyrin 3, mRNA (cDNA clone MGC:20003 IMAGE:4334996), complete cds
 281 28172%6e-73100% UniGene infoGeoGene info


AJ002309.2
  Homo sapiens mRNA for synaptogyrin 3
 145 14537%8e-32100% UniGene infoGeoGene info


DQ895555.2
  Synthetic construct clone IMAGE:100010015; FLH187835.01L; RZPDo839D08149D synaptogyrin 3 (SYNGR3) gene, encodes complete protein
 141 14136%1e-30100% Gene info


DQ892351.2
  Synthetic construct clone IMAGE:100004981; FLH187839.01X; RZPDo839D08150D synaptogyrin 3 (SYNGR3) gene, encodes complete protein
 141 14136%1e-30100% Gene info


CR604382.1
  full-length cDNA clone CS0DF020YL13 of Fetal brain of Homo sapiens (human)
 111 11128%8e-22100% UniGene infoGene info
Alignments
  

>gb|AC005606.3| GeoDownload subject sequence spanning the                                    HSP Homo sapiens chromosome 16, P1 clone 109-8C (LANL), complete 
sequence
Length=80662

 Score =  388 bits (210),  Expect = 3e-105
 Identities = 210/210 (100%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  1      CGGGAggcggcagcggctgcagcgttggtagcatcagcatcagcatcagcggcagcggca  60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49058  CGGGAGGCGGCAGCGGCTGCAGCGTTGGTAGCATCAGCATCAGCATCAGCGGCAGCGGCA  49117

Query  61     gcggcCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGT  120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49118  GCGGCCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGT  49177

Query  121    CCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCT  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  49178  CCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCT  49237

Query  181    GGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
              ||||||||||||||||||||||||||||||
Sbjct  49238  GGACCCCGTGAGCTTTGCGCGGCGGCCCCA  49267


>ref|NM_004209.4| UniGene infoGeoGene info Homo sapiens synaptogyrin 3 (SYNGR3), mRNA
Length=2054

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  388 bits (210),  Expect = 3e-105
 Identities = 210/210 (100%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  1    CGGGAggcggcagcggctgcagcgttggtagcatcagcatcagcatcagcggcagcggca  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CGGGAGGCGGCAGCGGCTGCAGCGTTGGTAGCATCAGCATCAGCATCAGCGGCAGCGGCA  60

Query  61   gcggcCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCGGCCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGT  120

Query  121  CCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCT  180

Query  181  GGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||||||
Sbjct  181  GGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210


>emb|CR608497.1| UniGene infoGene info full-length cDNA clone CS0DI044YA22 of Placenta Cot 25-normalized 
of Homo sapiens (human)
Length=1996

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  381 bits (206),  Expect = 6e-103
 Identities = 206/206 (100%), Gaps = 0/206 (0%)
 Strand=Plus/Plus

Query  5    Aggcggcagcggctgcagcgttggtagcatcagcatcagcatcagcggcagcggcagcgg  64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGGCGGCAGCGGCTGCAGCGTTGGTAGCATCAGCATCAGCATCAGCGGCAGCGGCAGCGG  60

Query  65   cCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGTCCCG  124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGTCCCG  120

Query  125  CCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGAC  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGAC  180

Query  185  CCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||
Sbjct  181  CCCGTGAGCTTTGCGCGGCGGCCCCA  206


>dbj|AK313894.1|  Homo sapiens cDNA, FLJ94530
Length=815

 Score =  368 bits (199),  Expect = 4e-99
 Identities = 199/199 (100%), Gaps = 0/199 (0%)
 Strand=Plus/Plus

Query  12   agcggctgcagcgttggtagcatcagcatcagcatcagcggcagcggcagcggcCTCGGG  71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGCGGCTGCAGCGTTGGTAGCATCAGCATCAGCATCAGCGGCAGCGGCAGCGGCCTCGGG  60

Query  72   CGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGC  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGC  120

Query  132  CGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGA  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGA  180

Query  192  GCTTTGCGCGGCGGCCCCA  210
            |||||||||||||||||||
Sbjct  181  GCTTTGCGCGGCGGCCCCA  199


>gb|BC009568.1| UniGene infoGeoGene info Homo sapiens synaptogyrin 3, mRNA (cDNA clone MGC:12440 IMAGE:3932502), 
complete cds
Length=1243

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  329 bits (178),  Expect = 2e-87
 Identities = 178/178 (100%), Gaps = 0/178 (0%)
 Strand=Plus/Plus

Query  33   atcagcatcagcatcagcggcagcggcagcggcCTCGGGCGGGGCCGGCCGGACGGACAG  92
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATCAGCATCAGCATCAGCGGCAGCGGCAGCGGCCTCGGGCGGGGCCGGCCGGACGGACAG  60

Query  93   GCGGACAGAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCT  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCGGACAGAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCT  120

Query  153  TCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  178


>emb|CR616926.1| UniGene infoGene info full-length cDNA clone CS0DF034YH04 of Fetal brain of Homo sapiens 
(human)
Length=1968

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  318 bits (172),  Expect = 5e-84
 Identities = 172/172 (100%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  39   atcagcatcagcggcagcggcagcggcCTCGGGCGGGGCCGGCCGGACGGACAGGCGGAC  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATCAGCATCAGCGGCAGCGGCAGCGGCCTCGGGCGGGGCCGGCCGGACGGACAGGCGGAC  60

Query  99   AGAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCG  158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCG  120

Query  159  CGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  172


>emb|CR597024.1| UniGene infoGene info full-length cDNA clone CS0DL009YF11 of B cells (Ramos cell line) 
Cot 25-normalized of Homo sapiens (human)
Length=1958

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  316 bits (171),  Expect = 2e-83
 Identities = 171/171 (100%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  40   tcagcatcagcggcagcggcagcggcCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACA  99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCAGCATCAGCGGCAGCGGCAGCGGCCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACA  60

Query  100  GAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGC  159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAGGCGCCAGGGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGC  120

Query  160  GGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  171


>emb|CR599198.1| UniGene infoGene info full-length cDNA clone CS0DF036YM16 of Fetal brain of Homo sapiens 
(human)
Length=1962

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  296 bits (160),  Expect = 2e-77
 Identities = 160/160 (100%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  51   ggcagcggcagcggcCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAG  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGCAGCGGCAGCGGCCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAG  60

Query  111  GGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAG  170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGGCGCGCGTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAG  120

Query  171  GGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  160


>gb|BC014087.2| UniGene infoGeoGene info Homo sapiens synaptogyrin 3, mRNA (cDNA clone MGC:20003 IMAGE:4334996), 
complete cds
Length=1996

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  281 bits (152),  Expect = 6e-73
 Identities = 152/152 (100%), Gaps = 0/152 (0%)
 Strand=Plus/Plus

Query  59   cagcggcCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGC  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CAGCGGCCTCGGGCGGGGCCGGCCGGACGGACAGGCGGACAGAAGGCGCCAGGGGCGCGC  60

Query  119  GTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCC  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTCCCGCCCGGGCCGGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCC  120

Query  179  CTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||||||||
Sbjct  121  CTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  152


>emb|AJ002309.2|HSAJ2309 UniGene infoGeoGene info Homo sapiens mRNA for synaptogyrin 3
Length=1896

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  145 bits (78),  Expect = 8e-32
 Identities = 78/78 (100%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  133  GGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAG  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGCCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAG  60

Query  193  CTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||
Sbjct  61   CTTTGCGCGGCGGCCCCA  78


>gb|DQ895555.2| Gene info Synthetic construct clone IMAGE:100010015; FLH187835.01L; RZPDo839D08149D 
synaptogyrin 3 (SYNGR3) gene, encodes complete 
protein
Length=730

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  141 bits (76),  Expect = 1e-30
 Identities = 76/76 (100%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  135  CCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCT  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   CCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCT  80

Query  195  TTGCGCGGCGGCCCCA  210
            ||||||||||||||||
Sbjct  81   TTGCGCGGCGGCCCCA  96


>gb|DQ892351.2| Gene info Synthetic construct clone IMAGE:100004981; FLH187839.01X; RZPDo839D08150D 
synaptogyrin 3 (SYNGR3) gene, encodes complete 
protein
Length=730

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  141 bits (76),  Expect = 1e-30
 Identities = 76/76 (100%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  135  CCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCT  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   CCATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCT  80

Query  195  TTGCGCGGCGGCCCCA  210
            ||||||||||||||||
Sbjct  81   TTGCGCGGCGGCCCCA  96


>emb|CR604382.1| UniGene infoGene info full-length cDNA clone CS0DF020YL13 of Fetal brain of Homo sapiens 
(human)
Length=1826

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score =  111 bits (60),  Expect = 8e-22
 Identities = 60/60 (100%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  151  CTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGCCCCA  60





  


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental 
samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Feb 6, 2008  4:27 AM
  Number of letters in database: 1,279,067,748
  Number of sequences in database:  6,366,000

Lambda     K      H
    1.33    0.621     1.12 
Gapped
Lambda     K      H
    1.33    0.621     1.12 
Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 0, Extension: 0
Number of Sequences: 6366000
Number of Hits to DB: 259479
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 22753904228
Length adjustment: 31
Effective length of query: 179
Effective length of database: 22556558228
Effective search space: 4037623922812
Effective search space used: 4037623922812
A: 0
X1: 13 (25.0 bits)
X2: 32 (59.1 bits)
X3: 54 (99.7 bits)
S1: 13 (25.1 bits)
S2: 21 (39.9 bits)