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Job Title: lcl|6168 human_genomic_seq(789 letters)

BLASTX 2.2.18 (Feb-03-2008) 
Reference:

Altschul, Stephen F., Thomas L. Madden, Alejandro 
A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and 
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new 
generation of protein database search programs", Nucleic Acids 
Res. 25:3389-3402.

RID: UR3XECD4013


Database: Homo sapiens RefSeq protein
           33,549 sequences; 16,550,763 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  human_genomic_seq
Length=789



                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

ref|NP_004200.2|  synaptogyrin 3 [Homo sapiens]                    65.9    4e-11 UniGene infoGene info
ref|NP_004702.2|  synaptogyrin 1 isoform 1a [Homo sapiens]         52.0    5e-07 UniGene infoGene info
ref|NP_663783.1|  synaptogyrin 1 isoform 1b [Homo sapiens]         52.0    5e-07 UniGene infoGene info
Alignments

>ref|NP_004200.2| UniGene infoGene info synaptogyrin 3 [Homo sapiens]
Length=229

 GENE ID: 9143 SYNGR3 | synaptogyrin 3 [Homo sapiens] (10 or fewer PubMed links)

 Score = 65.9 bits (159),  Expect = 4e-11
 Identities = 31/33 (93%), Positives = 31/33 (93%), Gaps = 0/33 (0%)
 Frame = +1

Query  691  MEgasfgagragaafDPVSFARRPQTLLRVVSW  789
            MEGASFGAGRAGAA DPVSFARRPQTLLRV SW
Sbjct  1    MEGASFGAGRAGAALDPVSFARRPQTLLRVASW  33


>ref|NP_004702.2| UniGene infoGene info synaptogyrin 1 isoform 1a [Homo sapiens]
Length=233

 GENE ID: 9145 SYNGR1 | synaptogyrin 1 [Homo sapiens] (Over 10 PubMed links)

 Score = 52.0 bits (123),  Expect = 5e-07
 Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 0/33 (0%)
 Frame = +1

Query  691  MEgasfgagragaafDPVSFARRPQTLLRVVSW  789
            MEG ++GAG+AG AFDP +  R+P T+LRVVSW
Sbjct  1    MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSW  33


>ref|NP_663783.1| UniGene infoGene info synaptogyrin 1 isoform 1b [Homo sapiens]
Length=191

 GENE ID: 9145 SYNGR1 | synaptogyrin 1 [Homo sapiens] (Over 10 PubMed links)

 Score = 52.0 bits (123),  Expect = 5e-07
 Identities = 21/33 (63%), Positives = 27/33 (81%), Gaps = 0/33 (0%)
 Frame = +1

Query  691  MEgasfgagragaafDPVSFARRPQTLLRVVSW  789
            MEG ++GAG+AG AFDP +  R+P T+LRVVSW
Sbjct  1    MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSW  33







  Database: Homo sapiens RefSeq protein
    Posted date:  Feb 6, 2008  4:43 AM
  Number of letters in database: 16,550,763
  Number of sequences in database:  33,549

Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33549
Number of Hits to DB: 25405428
Number of extensions: 692075
Number of successful extensions: 3488
Number of sequences better than 0.01: 3
Number of HSP's better than 0.01 without gapping: 0
Number of HSP's gapped: 3471
Number of HSP's successfully gapped: 3
Length of query: 789
Length of database: 16550763
Length adjustment: 100
Effective length of query: 689
Effective length of database: 13195863
Effective search space: 2150925669
Effective search space used: 2150925669
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 86 (37.7 bits)