[Reformat these Results] [Formatting options] [Edit and Resubmit] [Save Search Strategies]

Job Title: MIMI_L4 complement(6238..7602)

Show Conserved Domains

BLASTP 2.2.18 (Feb-03-2008) 
Reference:

Altschul, Stephen F., Thomas L. Madden, Alejandro 
A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and 
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new 
generation of protein database search programs", Nucleic Acids 
Res. 25:3389-3402.

Reference 
for compositional score matrix adjustment:
Altschul, 
Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, 
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo 
Yu (2005) "Protein database searches using compositionally 
adjusted substitution matrices", FEBS J. 272:5101-5109.

RID: UR37YXA9015


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           5,903,875 sequences; 2,033,874,430 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  MIMI_L4 complement(6238..7602)
Length=100



Distance tree of resultsNew  

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

ref|YP_142358.1|  KilA N-terminal domain, N1R/P28 DNA binding ...   186    4e-46 Gene info
ref|YP_142386.1|  KilA N-terminal domain, N1R/P28 DNA binding ...  68.2    2e-10 Gene info
Alignments
  

>ref|YP_142358.1| Gene info KilA N-terminal domain, N1R/P28 DNA binding [Acanthamoeba polyphaga 
mimivirus]
 sp|Q5UP83|YL004_MIMIV  Putative KilA-N domain-containing protein L4
 gb|AAV50279.1| Gene info KilA N-terminal domain, N1R/P28 DNA binding [Acanthamoeba polyphaga 
mimivirus]
Length=454

 GENE ID: 3162975 MIMI_L4 | KilA N-terminal domain, N1R/P28 DNA binding
[Acanthamoeba polyphaga mimivirus] (10 or fewer PubMed links)

 Score =  186 bits (472),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 100/100 (100%), Positives = 100/100 (100%), Gaps = 0/100 (0%)

Query  1   MPQKTSKSKSSRTRYIEDSDDETRGRSRNRSIEKSRSRSLDKSQKKSRDKSLTRSRSKSP  60
           MPQKTSKSKSSRTRYIEDSDDETRGRSRNRSIEKSRSRSLDKSQKKSRDKSLTRSRSKSP
Sbjct  1   MPQKTSKSKSSRTRYIEDSDDETRGRSRNRSIEKSRSRSLDKSQKKSRDKSLTRSRSKSP  60

Query  61  EKSKSRSKSLTRSRSKSPKKCITGNRKNSKHTKKDNEYTT  100
           EKSKSRSKSLTRSRSKSPKKCITGNRKNSKHTKKDNEYTT
Sbjct  61  EKSKSRSKSLTRSRSKSPKKCITGNRKNSKHTKKDNEYTT  100


>ref|YP_142386.1| Gene info KilA N-terminal domain, N1R/P28 DNA binding [Acanthamoeba polyphaga 
mimivirus]
 sp|Q5UPA5|YL032_MIMIV  Putative KilA-N domain-containing protein L32
 gb|AAV50307.1| Gene info KilA N-terminal domain, N1R/P28 DNA binding [Acanthamoeba polyphaga 
mimivirus]
Length=372

 GENE ID: 3162666 MIMI_L32 | KilA N-terminal domain, N1R/P28 DNA binding
[Acanthamoeba polyphaga mimivirus] (10 or fewer PubMed links)

 Score = 68.2 bits (165),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 35/40 (87%), Gaps = 0/40 (0%)

Query  1   MPQKTSKSKSSRTRYIEDSDDETRGRSRNRSIEKSRSRSL  40
           MP K  KSK  RTRY+EDSDDETRGRSRNRS+EKSRS+SL
Sbjct  1   MPHKAPKSKLFRTRYVEDSDDETRGRSRNRSVEKSRSKSL  40





  


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples from WGS projects
    Posted date:  Feb 6, 2008  4:43 AM
  Number of letters in database: 2,033,874,430
  Number of sequences in database:  5,903,875

Lambda     K      H
   0.297    0.111    0.279 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5903875
Number of Hits to DB: 27794786
Number of extensions: 813693
Number of successful extensions: 17344
Number of sequences better than 100: 1217
Number of HSP's better than 100 without gapping: 0
Number of HSP's gapped: 12897
Number of HSP's successfully gapped: 2539
Length of query: 100
Length of database: 2033874430
Length adjustment: 69
Effective length of query: 31
Effective length of database: 1626507055
Effective search space: 50421718705
Effective search space used: 50421718705
T: 11
A: 40
X1: 17 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.2 bits)
S2: 64 (29.3 bits)