Index Seq ID Count Primer type Orientation Start Len tm GC% Any compl 3' compl Seq Prod size Seq len Included len Pair any compl Pair 3' compl Motif Motif Len SSR SSRLen 1 @GRC13_0019_FC:7:3:12697:7839#GGGT/1_@GRC13_0019_FC:7:3:12697:7839#AACA/2 1 SSR FORWARD 10 19 53.24 52.63 3.00 2.00 GTGGTGGAGGAGACTTGTA 168 202 202 4.00 1.00 GAG 3 GAGGAGGAGGAGGAGGAGGAG 21 2 @GRC13_0019_FC:7:3:12697:7839#GGGT/1_@GRC13_0019_FC:7:3:12697:7839#AACA/2 1 SSR REVERSE 177 19 53.68 42.11 4.00 2.00 AATGGCTTCACTAACATGC 3 @GRC13_0019_FC:7:3:12697:7839#GGGT/1_@GRC13_0019_FC:7:3:12697:7839#AACA/2 1 SSR FORWARD 46 19 54.85 57.89 3.00 1.00 GAGGAGGAGGAGGAGACTT 132 202 202 2.00 0.00 GGA 3 GGAGGAGGAGGAGGAGGA 18 4 @GRC13_0019_FC:7:3:12697:7839#GGGT/1_@GRC13_0019_FC:7:3:12697:7839#AACA/2 1 SSR REVERSE 177 19 53.68 42.11 4.00 2.00 AATGGCTTCACTAACATGC 5 @GRC13_0019_FC:7:5:10971:6205#AGGA/1_@GRC13_0019_FC:7:5:10971:6205#GGGT/2 1 SSR FORWARD 13 17 53.95 52.94 4.00 2.00 TGTCATGGTCCTCATGG 168 202 202 5.00 3.00 GGA 3 GGAGGAGGAGGAGGAGGA 18 6 @GRC13_0019_FC:7:5:10971:6205#AGGA/1_@GRC13_0019_FC:7:5:10971:6205#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 7 @GRC13_0019_FC:7:5:10971:6205#AGGA/1_@GRC13_0019_FC:7:5:10971:6205#GGGT/2 1 SSR FORWARD 56 17 53.94 52.94 3.00 3.00 GAGGAGGGCATTGTCAT 125 202 202 5.00 2.00 GGA 3 GGAGGAGGAGGA 12 8 @GRC13_0019_FC:7:5:10971:6205#AGGA/1_@GRC13_0019_FC:7:5:10971:6205#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 9 @GRC13_0019_FC:7:6:11501:17013#GGGT/1_@GRC13_0019_FC:7:6:11501:17013#GCGA/2 1 SSR FORWARD 37 18 53.83 55.56 3.00 0.00 GCCGACTCAGACCAATAC 121 202 202 6.00 3.00 GAA 3 GAAGAAGAAGAAGAA 15 10 @GRC13_0019_FC:7:6:11501:17013#GGGT/1_@GRC13_0019_FC:7:6:11501:17013#GCGA/2 1 SSR REVERSE 157 19 53.90 47.37 3.00 2.00 CTTCTTCTTCGTCGGTGTA 11 @GRC13_0019_FC:7:6:11501:17013#GGGT/1_@GRC13_0019_FC:7:6:11501:17013#GCGA/2 1 SSR FORWARD 52 19 53.90 47.37 3.00 0.00 TACACCGACGAAGAAGAAG 151 202 202 5.00 3.00 GAA 3 GAAGAAGAAGAAGAAGAAGAAGAAGAA 27 12 @GRC13_0019_FC:7:6:11501:17013#GGGT/1_@GRC13_0019_FC:7:6:11501:17013#GCGA/2 1 SSR REVERSE 202 19 54.85 47.37 4.00 3.00 CGTCGTATTGATCGTCATC 13 @GRC13_0019_FC:7:7:5433:13589#GGAG/1_@GRC13_0019_FC:7:7:5433:13589#GGGT/2 1 SSR FORWARD 34 18 54.12 55.56 6.00 0.00 GTCATGGTCATGGTCCTC 147 202 202 7.00 1.00 GGA 3 GGAGGAGGAGGA 12 14 @GRC13_0019_FC:7:7:5433:13589#GGAG/1_@GRC13_0019_FC:7:7:5433:13589#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 15 @GRC13_0019_FC:7:7:5433:13589#GGAG/1_@GRC13_0019_FC:7:7:5433:13589#GGGT/2 1 SSR FORWARD 34 18 54.12 55.56 6.00 0.00 GTCATGGTCATGGTCCTC 147 202 202 7.00 1.00 GGA 3 GGAGGAGGAGGA 12 16 @GRC13_0019_FC:7:7:5433:13589#GGAG/1_@GRC13_0019_FC:7:7:5433:13589#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 17 @GRC13_0019_FC:7:20:7414:15511#GGGT/1_@GRC13_0019_FC:7:20:7414:15511#GGGG/2 1 SSR FORWARD 39 19 54.48 42.11 2.00 2.00 GCACTCCAACAAAACCATA 123 202 202 4.00 1.00 CCA 3 CCACCACCACCACCA 15 18 @GRC13_0019_FC:7:20:7414:15511#GGGT/1_@GRC13_0019_FC:7:20:7414:15511#GGGG/2 1 SSR REVERSE 161 19 54.67 52.63 4.00 2.00 GGTGGGGACTTGTACTCAT 19 @GRC13_0019_FC:7:20:7414:15511#GGGT/1_@GRC13_0019_FC:7:20:7414:15511#GGGG/2 1 SSR FORWARD 39 19 54.48 42.11 2.00 2.00 GCACTCCAACAAAACCATA 157 202 202 6.00 3.00 CCA 3 CCACCACCACCA 12 20 @GRC13_0019_FC:7:20:7414:15511#GGGT/1_@GRC13_0019_FC:7:20:7414:15511#GGGG/2 1 SSR REVERSE 195 19 53.79 42.11 6.00 0.00 TTCATATGGTGGAGGAAGA 21 @GRC13_0019_FC:7:22:15831:20485#GGGT/1_@GRC13_0019_FC:7:22:15831:20485#GGGT/2 1 SSR FORWARD 53 19 54.54 47.37 4.00 2.00 GAGGAAGGCCGATAAAGTA 148 202 202 3.00 0.00 TGA 3 TGATGATGATGATGATGATGATGA 24 22 @GRC13_0019_FC:7:22:15831:20485#GGGT/1_@GRC13_0019_FC:7:22:15831:20485#GGGT/2 1 SSR REVERSE 200 20 51.89 30.00 4.00 1.00 GCAATAAATCATGTCAATCA 23 @GRC13_0019_FC:7:25:16718:14533#GTCG/1_@GRC13_0019_FC:7:25:16718:14533#GGGT/2 1 SSR FORWARD 29 19 54.00 42.11 3.00 3.00 TGGTGAGGGTAAAGTTGAA 121 202 202 5.00 3.00 GAA 3 GAAGAAGAAGAAGAAGAA 18 24 @GRC13_0019_FC:7:25:16718:14533#GTCG/1_@GRC13_0019_FC:7:25:16718:14533#GGGT/2 1 SSR REVERSE 149 19 54.17 47.37 4.00 2.00 CCAAAACCCTAGCTTCTTC 25 @GRC13_0019_FC:7:26:10894:11477#GCAT/1_@GRC13_0019_FC:7:26:10894:11477#GGGT/2 1 SSR FORWARD 29 18 54.12 55.56 6.00 0.00 GTCATGGTCATGGTCCTC 152 202 202 7.00 1.00 GGA 3 GGAGGAGGAGGA 12 26 @GRC13_0019_FC:7:26:10894:11477#GCAT/1_@GRC13_0019_FC:7:26:10894:11477#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 27 @GRC13_0019_FC:7:26:10894:11477#GCAT/1_@GRC13_0019_FC:7:26:10894:11477#GGGT/2 1 SSR FORWARD 56 17 53.94 52.94 3.00 3.00 GAGGAGGGCATTGTCAT 125 202 202 5.00 2.00 GGA 3 GGAGGAGGAGGA 12 28 @GRC13_0019_FC:7:26:10894:11477#GCAT/1_@GRC13_0019_FC:7:26:10894:11477#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 29 @GRC13_0019_FC:7:41:14747:9444#GTCA/1_@GRC13_0019_FC:7:41:14747:9444#GGGT/2 1 SSR FORWARD 27 19 53.76 42.11 4.00 0.00 ATCATCCCCTTCCAATTAC 123 202 202 4.00 3.00 CAA 3 CAACAACAACAACAA 15 30 @GRC13_0019_FC:7:41:14747:9444#GTCA/1_@GRC13_0019_FC:7:41:14747:9444#GGGT/2 1 SSR REVERSE 149 19 53.54 36.84 2.00 0.00 TTGTTGTTGTTGTTGATGG 31 @GRC13_0019_FC:7:41:14747:9444#GTCA/1_@GRC13_0019_FC:7:41:14747:9444#GGGT/2 1 SSR FORWARD 36 19 54.02 42.11 4.00 0.00 TTCCAATTACCATCACCAC 144 202 202 4.00 2.00 CAA 3 CAACAACAACAACAACAACAA 21 32 @GRC13_0019_FC:7:41:14747:9444#GTCA/1_@GRC13_0019_FC:7:41:14747:9444#GGGT/2 1 SSR REVERSE 179 19 54.50 42.11 5.00 0.00 GCCATAATGTTGTTGCTGT 33 @GRC13_0019_FC:7:49:6979:3152#GGGT/1_@GRC13_0019_FC:7:49:6979:3152#ACCT/2 1 SSR FORWARD 11 19 53.98 47.37 3.00 2.00 TCTCAACAAGCAGGAAGAG 146 202 202 4.00 3.00 AGT 3 AGTAGTAGTAGT 12 34 @GRC13_0019_FC:7:49:6979:3152#GGGT/1_@GRC13_0019_FC:7:49:6979:3152#ACCT/2 1 SSR REVERSE 156 20 53.83 35.00 6.00 2.00 CATGATCAATCCTTTTGCTA 35 @GRC13_0019_FC:7:49:6979:3152#GGGT/1_@GRC13_0019_FC:7:49:6979:3152#ACCT/2 1 SSR FORWARD 42 19 53.90 57.89 8.00 0.00 GCTCAGCAGAGCAGAGTAG 119 202 202 4.00 1.00 GTA 3 GTAGTAGTAGTA 12 36 @GRC13_0019_FC:7:49:6979:3152#GGGT/1_@GRC13_0019_FC:7:49:6979:3152#ACCT/2 1 SSR REVERSE 160 18 54.23 44.44 6.00 2.00 CTGCCATGATCAATCCTT 37 @GRC13_0019_FC:7:50:15958:16864#TTAG/1_@GRC13_0019_FC:7:50:15958:16864#GGGT/2 1 SSR FORWARD 33 19 54.09 36.84 6.00 1.00 ATCAATTGCTGATGTTGCT 136 202 202 5.00 2.00 AGT 3 AGTAGTAGTAGT 12 38 @GRC13_0019_FC:7:50:15958:16864#TTAG/1_@GRC13_0019_FC:7:50:15958:16864#GGGT/2 1 SSR REVERSE 168 19 53.31 52.63 4.00 2.00 CTCAGCTACCTTCCTGCTA 39 @GRC13_0019_FC:7:58:6887:19537#GGGT/1_@GRC13_0019_FC:7:58:6887:19537#GGGT/2 1 SSR FORWARD 41 18 54.71 61.11 3.00 1.00 GTCACTCGGACCACTCTG 105 202 202 4.00 3.00 ACC 3 ACCACCACCACC 12 40 @GRC13_0019_FC:7:58:6887:19537#GGGT/1_@GRC13_0019_FC:7:58:6887:19537#GGGT/2 1 SSR REVERSE 145 19 53.42 52.63 4.00 1.00 GAGTTAGGCCAGGGTTAGT 41 @GRC13_0019_FC:7:59:7050:5230#GTGC/1_@GRC13_0019_FC:7:59:7050:5230#GGGT/2 1 SSR FORWARD 18 19 53.22 47.37 3.00 0.00 TCTGACCCACCTGATTTAC 133 202 202 4.00 0.00 CAT 3 CATCATCATCATCATCAT 18 42 @GRC13_0019_FC:7:59:7050:5230#GTGC/1_@GRC13_0019_FC:7:59:7050:5230#GGGT/2 1 SSR REVERSE 150 18 53.30 44.44 4.00 3.00 CGAGTTGGATGATGATGA 43 @GRC13_0019_FC:7:59:7050:5230#GTGC/1_@GRC13_0019_FC:7:59:7050:5230#GGGT/2 1 SSR FORWARD 22 19 54.61 47.37 3.00 2.00 ACCCACCTGATTTACCATC 164 202 202 4.00 1.00 TCA 3 TCATCATCATCATCA 15 44 @GRC13_0019_FC:7:59:7050:5230#GTGC/1_@GRC13_0019_FC:7:59:7050:5230#GGGT/2 1 SSR REVERSE 185 18 54.57 50.00 3.00 3.00 ACGGCTTTGATGACTGAG 45 @GRC13_0019_FC:7:61:16125:20856#GGGT/1_@GRC13_0019_FC:7:61:16125:20856#GTCA/2 1 SSR FORWARD 24 19 54.50 42.11 5.00 0.00 GCCATAATGTTGTTGCTGT 147 202 202 4.00 2.00 TGT 3 TGTTGTTGTTGTTGTTGTTGT 21 46 @GRC13_0019_FC:7:61:16125:20856#GGGT/1_@GRC13_0019_FC:7:61:16125:20856#GTCA/2 1 SSR REVERSE 170 19 54.02 42.11 4.00 0.00 TTCCAATTACCATCACCAC 47 @GRC13_0019_FC:7:61:16125:20856#GGGT/1_@GRC13_0019_FC:7:61:16125:20856#GTCA/2 1 SSR FORWARD 43 19 53.34 36.84 2.00 0.00 TGCTGTTGTTGTTGTTGTT 128 202 202 4.00 3.00 GTT 3 GTTGTTGTTGTTGTTGTT 18 48 @GRC13_0019_FC:7:61:16125:20856#GGGT/1_@GRC13_0019_FC:7:61:16125:20856#GTCA/2 1 SSR REVERSE 170 19 54.02 42.11 4.00 0.00 TTCCAATTACCATCACCAC 49 @GRC13_0019_FC:7:68:2210:18790#CAAC/1_@GRC13_0019_FC:7:68:2210:18790#GGGT/2 1 SSR FORWARD 37 19 54.33 47.37 3.00 3.00 AGACCCAAGAAGCAGAATC 143 202 202 6.00 1.00 CAA 3 CAACAACAACAA 12 50 @GRC13_0019_FC:7:68:2210:18790#CAAC/1_@GRC13_0019_FC:7:68:2210:18790#GGGT/2 1 SSR REVERSE 179 19 53.92 47.37 3.00 0.00 GCATTTGGGTATGTGAGAG 51 @GRC13_0019_FC:7:68:2210:18790#CAAC/1_@GRC13_0019_FC:7:68:2210:18790#GGGT/2 1 SSR FORWARD 54 19 54.00 42.11 3.00 0.00 TCCCTTAGACCAACAACAA 126 202 202 4.00 1.00 CAA 3 CAACAACAACAA 12 52 @GRC13_0019_FC:7:68:2210:18790#CAAC/1_@GRC13_0019_FC:7:68:2210:18790#GGGT/2 1 SSR REVERSE 179 19 53.92 47.37 3.00 0.00 GCATTTGGGTATGTGAGAG 53 @GRC13_0019_FC:7:84:9397:3883#CTCC/1_@GRC13_0019_FC:7:84:9397:3883#GGGT/2 1 SSR FORWARD 25 19 54.65 42.11 4.00 2.00 GATGCCTCTGCAAATATGA 132 202 202 4.00 1.00 ACC 3 ACCACCACCACCACCACC 18 54 @GRC13_0019_FC:7:84:9397:3883#CTCC/1_@GRC13_0019_FC:7:84:9397:3883#GGGT/2 1 SSR REVERSE 156 19 53.16 47.37 2.00 2.00 GGTGGTGGTATTGGAACTA 55 @GRC13_0019_FC:7:84:9397:3883#CTCC/1_@GRC13_0019_FC:7:84:9397:3883#GGGT/2 1 SSR FORWARD 25 19 54.65 42.11 4.00 2.00 GATGCCTCTGCAAATATGA 167 202 202 4.00 2.00 ACC 3 ACCACCACCACCACCACC 18 56 @GRC13_0019_FC:7:84:9397:3883#CTCC/1_@GRC13_0019_FC:7:84:9397:3883#GGGT/2 1 SSR REVERSE 191 19 53.65 42.11 2.00 0.00 ATTCTGGTGATGCTGATGT 57 @GRC13_0019_FC:7:99:12726:5903#GGGT/1_@GRC13_0019_FC:7:99:12726:5903#CACC/2 1 SSR FORWARD 19 17 54.25 52.94 3.00 0.00 GAGGGTCACGCATCTTT 147 202 202 3.00 3.00 TTC 3 TTCTTCTTCTTCTTCTTC 18 58 @GRC13_0019_FC:7:99:12726:5903#GGGT/1_@GRC13_0019_FC:7:99:12726:5903#CACC/2 1 SSR REVERSE 165 20 54.47 50.00 2.00 0.00 TGGTTTGAGGAGTAGAGAGG 59 @GRC13_0019_FC:7:99:12726:5903#GGGT/1_@GRC13_0019_FC:7:99:12726:5903#CACC/2 1 SSR FORWARD 24 19 53.52 36.84 2.00 0.00 TCACGCATCTTTTTCTTCT 142 202 202 4.00 3.00 CTT 3 CTTCTTCTTCTT 12 60 @GRC13_0019_FC:7:99:12726:5903#GGGT/1_@GRC13_0019_FC:7:99:12726:5903#CACC/2 1 SSR REVERSE 165 20 54.47 50.00 2.00 0.00 TGGTTTGAGGAGTAGAGAGG 61 @GRC13_0019_FC:7:101:17693:6897#ATTG/1_@GRC13_0019_FC:7:101:17693:6897#GGGT/2 1 SSR FORWARD 27 18 54.12 55.56 6.00 0.00 GTCATGGTCATGGTCCTC 154 202 202 7.00 1.00 GGA 3 GGAGGAGGAGGA 12 62 @GRC13_0019_FC:7:101:17693:6897#ATTG/1_@GRC13_0019_FC:7:101:17693:6897#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 63 @GRC13_0019_FC:7:101:17693:6897#ATTG/1_@GRC13_0019_FC:7:101:17693:6897#GGGT/2 1 SSR FORWARD 54 17 53.94 52.94 3.00 3.00 GAGGAGGGCATTGTCAT 127 202 202 5.00 2.00 GGA 3 GGAGGAGGAGGA 12 64 @GRC13_0019_FC:7:101:17693:6897#ATTG/1_@GRC13_0019_FC:7:101:17693:6897#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 65 @GRC13_0019_FC:7:110:8374:3932#GGGT/1_@GRC13_0019_FC:7:110:8374:3932#GGAC/2 1 SSR FORWARD 20 19 53.58 42.11 3.00 0.00 AAGAGAACCATTCCCAGTT 138 202 202 3.00 0.00 CCA 3 CCACCACCACCA 12 66 @GRC13_0019_FC:7:110:8374:3932#GGGT/1_@GRC13_0019_FC:7:110:8374:3932#GGAC/2 1 SSR REVERSE 157 19 55.42 47.37 5.00 3.00 CAGGTGGATGATGATGATG 67 @GRC13_0019_FC:7:110:8374:3932#GGGT/1_@GRC13_0019_FC:7:110:8374:3932#GGAC/2 1 SSR FORWARD 20 19 53.58 42.11 3.00 0.00 AAGAGAACCATTCCCAGTT 138 202 202 3.00 0.00 TCA 3 TCATCATCATCA 12 68 @GRC13_0019_FC:7:110:8374:3932#GGGT/1_@GRC13_0019_FC:7:110:8374:3932#GGAC/2 1 SSR REVERSE 157 19 55.42 47.37 5.00 3.00 CAGGTGGATGATGATGATG 69 @GRC13_0019_FC:7:110:8374:3932#GGGT/1_@GRC13_0019_FC:7:110:8374:3932#GGAC/2 1 SSR FORWARD 58 19 54.29 47.37 5.00 3.00 CCACCTCATCATCATCATC 135 202 202 6.00 3.00 TCA 3 TCATCATCATCATCATCATCA 21 70 @GRC13_0019_FC:7:110:8374:3932#GGGT/1_@GRC13_0019_FC:7:110:8374:3932#GGAC/2 1 SSR REVERSE 192 18 54.62 50.00 4.00 2.00 AGGATGGAGTGGTGCATA 71 @GRC13_0019_FC:7:115:14830:2530#GGGC/1_@GRC13_0019_FC:7:115:14830:2530#GGGT/2 1 SSR FORWARD 31 18 54.12 55.56 6.00 0.00 GTCATGGTCATGGTCCTC 150 202 202 7.00 1.00 GGA 3 GGAGGAGGAGGA 12 72 @GRC13_0019_FC:7:115:14830:2530#GGGC/1_@GRC13_0019_FC:7:115:14830:2530#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT 73 @GRC13_0019_FC:7:115:14830:2530#GGGC/1_@GRC13_0019_FC:7:115:14830:2530#GGGT/2 1 SSR FORWARD 58 17 53.94 52.94 3.00 3.00 GAGGAGGGCATTGTCAT 123 202 202 5.00 2.00 GGA 3 GGAGGAGGAGGA 12 74 @GRC13_0019_FC:7:115:14830:2530#GGGC/1_@GRC13_0019_FC:7:115:14830:2530#GGGT/2 1 SSR REVERSE 180 19 54.53 42.11 4.00 0.00 ATGAGCATGTGGTTGATGT